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This is a strange bug. I get the same outcome using Power BI Desktop and the Power BI Service. In the below screenshot, I have duplicated a Matrix such that the only difference is the highlighted toggle. As you can see in the bottom matrix, the values in the bottom matrix are incorrect. They are the values from the top matrix, transposed in the same column coordinates.
That being, the top matrix has 7 columns. The bottom has 4 columns. The bottom's values are columns 1 to 4 from the top Matrix, instead of being columns 1, 3, 5, 7.
The issue is not present when the Columns are collapsed up (second screenshot). I can remove either column's field and see the correct result.
I have tried to reproduce the issue in a small example file, but could not get the same issue. This suggests that this only occurs when the complexity of the model & measures grow. (Third Screenshot)
2nd Screenshot
3rd Screenshot
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