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HI @chefe,
First of all, gateway will auto encrypt on sending data, you not need to care about this.
The On-premises data gateway implements data compression, and transport encryption, in all modes.
In addition, I don't think power bi can recognize records/data who encrypted by third party applications/tools.
There encrypted records can't corresponded with original data source stored in power bi report file.
BTW, I think these insecure is means limit of network protocol, it not means these option will discard default encryption.
Regards,
Xiaoxin Sheng