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Good news first: It looks like with the February update, this issue was resolved: New card visual bug ...
But sadly now there's a new issue with the visual, this time it's the custom formatting of the Reference Labels.
Some operations are causing the whole visual to throw the above error "Repeated indices found in GroupBy or Projections".
In my case it happens every time I am adding a custom format rule for Reference Label > Detail > Font Color / Color.
This is only the case when the same field is used for the formatting rule like as for the data of the detail field itself.
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